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1

A review of variable selection methods in Partial Least Squares Regression

Tahir Mehmood, Kristian Hovde Liland, Lars Snipen, Solve Sæbø

Journal:

Chemometrics and Intelligent Laboratory Systems

Year:

2012

Language:

english

File:

PDF, 662 KB

english, 2012

2

Analysis of intra-genomic GC content homogeneity within prokaryotes

Jon Bohlin, Lars Snipen, Simon P Hardy, Anja B Kristoffersen, Karin Lagesen, Torunn Dønsvik, Eystein Skjerve, David W Ussery

Journal:

Year:

2010

Language:

english

File:

PDF, 613 KB

english, 2010

3

A Partial Least Squares based algorithm for parsimonious variable selection

Tahir Mehmood, Harald Martens, Solve Sæbø, Jonas Warringer, Lars Snipen

Journal:

Algorithms for Molecular Biology

Year:

2011

Language:

english

File:

PDF, 353 KB

english, 2011

4

Predicting live-chilling dynamics of Atlantic salmon (Salmo salar)

Per Olav Skjervold, Svein Olav Fjæra, Lars Snipen

Journal:

Year:

2002

Language:

english

File:

PDF, 164 KB

english, 2002

5

Target recognition, resistance, immunity and genome mining of class II bacteriocins from Gram-positive bacteria

Kjos, M., Borrero, J., Opsata, M., Birri, D. J., Holo, H., Cintas, L. M., Snipen, L., Hernandez, P. E., Nes, I. F., Diep, D. B.

Journal:

Microbiology (Society for General Microbiology)

Year:

2011

Language:

english

File:

PDF, 884 KB

english, 2011

6

Evolution of the immune system influences speciation rates in teleost fishes

Malmstrøm, Martin, Matschiner, Michael, Tørresen, Ole K, Star, Bastiaan, Snipen, Lars G, Hansen, Thomas F, Baalsrud, Helle T, Nederbragt, Alexander J, Hanel, Reinhold, Salzburger, Walter, Stenseth, Ni

Journal:

Nature Genetics

Year:

2016

Language:

english

File:

PDF, 1.64 MB

english, 2016

7

Comparison of reduced metagenome and 16S rRNA gene sequencing for determination of genetic diversity and mother-child overlap of the gut associated microbiota

Ravi, Anuradha, Avershina, Ekaterina, Angell, Inga Leena, Ludvigsen, Jane, Manohar, Prashanth, Padmanaban, Sumathi, Nachimuthu, Ramesh, Snipen, Lars, Rudi, Knut

Journal:

Journal of Microbiological Methods

Year:

2018

Language:

english

File:

PDF, 1.50 MB

english, 2018

8

Rapid Succession of Actively Transcribing Denitrifier Populations in Agricultural Soil During an Anoxic Spell

Liu, Binbin, Zhang, Xiaojun, Bakken, Lars R., Snipen, Lars, Frostegård, Åsa

Journal:

Frontiers in Microbiology

Year:

2019

File:

PDF, 2.99 MB

2019

9

Rapid Succession of Actively Transcribing Denitrifier Populations in Agricultural Soil During an Anoxic Spell

Liu, Binbin, Zhang, Xiaojun, Bakken, Lars R., Snipen, Lars, Frostegård, Åsa

Journal:

Frontiers in Microbiology

Year:

2019

Language:

english

File:

PDF, 2.99 MB

english, 2019

10

Predicting Plant Height of Greenhouse Grown Crops with a Polynomial Growth Rate Model

Lars Gustav Snipen

Journal:

Biometrical Journal

Year:

1998

Language:

english

File:

PDF, 273 KB

english, 1998

11

Adjusted Prediction of Plant Height with Application to Greenhouse Grown Poinsettias

Solve Sæbø, Trygve Almøy, Lars Snipen

Journal:

Biometrical Journal

Year:

2001

Language:

english

File:

PDF, 330 KB

english, 2001

12

Regression as a Method to Predict Copy Numbers in Comparative Genomic Hybridization Studies on Bacteria

Guri Feten, Trygve Almøy, Lars Snipen, Ågot Aakra, Are H. Aastveit

Journal:

Biometrical Journal

Year:

2006

Language:

english

File:

PDF, 282 KB

english, 2006

13

Mixture Models as a Method to Find Present and Divergent Genes in Comparative Genomic Hybridization Studies on Bacteria

Guri Feten, Trygve Almøy, Lars Snipen, Ågot Aakra, O. Ludvig Nyquist, Are H. Aastveit

Journal:

Biometrical Journal

Year:

2007

Language:

english

File:

PDF, 6.75 MB

english, 2007

14

How far do physical factors determine phytoplankton biomass in lakes?

Knut L. Seip, M. Sneek, L.-G. Snipen

Journal:

Chemometrics and Intelligent Laboratory Systems

Year:

1994

Language:

english

File:

PDF, 1.02 MB

english, 1994

15

Probabilistically assisted spot segmentation — With application to DNA microarray images

Øystein Gjerstad, Ågot Aakra, Lars Snipen, Ulf Indahl

Journal:

Chemometrics and Intelligent Laboratory Systems

Year:

2009

Language:

english

File:

PDF, 611 KB

english, 2009

16

Mining for genotype-phenotype relations in Saccharomyces using partial least squares

Tahir Mehmood, Harald Martens, Solve Sæbø, Jonas Warringer, Lars Snipen

Journal:

BMC Bioinformatics

Year:

2011

Language:

english

File:

PDF, 285 KB

english, 2011

17

Global transcriptome response inLactobacillus sakeiduring growth on ribose

Anette McLeod, Lars Snipen, Kristine Naterstad, Lars Axelsson

Journal:

BMC Microbiology

Year:

2011

Language:

english

File:

PDF, 454 KB

english, 2011

18

Comparative genomic analysis reveals significant enrichment of mobile genetic elements and genes encoding surface structure-proteins in hospital-associated clonal complex 2Enterococcus faecalis

Margrete Solheim, Mari C Brekke, Lars G Snipen, Rob JL Willems, Ingolf F Nes, Dag A Brede

Journal:

BMC Microbiology

Year:

2011

Language:

english

File:

PDF, 1.44 MB

english, 2011

19

On the Origins of aVibrioSpecies

Tammi Vesth, Trudy M. Wassenaar, Peter F. Hallin, Lars Snipen, Karin Lagesen, David W. Ussery

Journal:

Microbial Ecology

Year:

2010

Language:

english

File:

PDF, 667 KB

english, 2010

20

Comparative genomics ofLactobacillus sakeiwith emphasis on strains from meat

O. Ludvig Nyquist, Anette McLeod, Dag A. Brede, Lars Snipen, Ågot Aakra, Ingolf F. Nes

Journal:

Molecular Genetics and Genomics

Year:

2011

Language:

english

File:

PDF, 643 KB

english, 2011

21

Identification of PaCOL1 and PaCOL2, two CONSTANS-like genes showing decreased transcript levels preceding short day induced growth cessation in Norway spruce

Anna Holefors, Lars Opseth, Anne Katrine Ree Rosnes, Linda Ripel, Lars Snipen, Carl Gunnar Fossdal, Jorunn E. Olsen

Journal:

Plant Physiology and Biochemistry

Year:

2009

Language:

english

File:

PDF, 2.87 MB

english, 2009

22

Diversity of Lactobacillus sakei strains investigated by phenotypic and genotypic methods

Anette McLeod, O. Ludvig Nyquist, Lars Snipen, Kristine Naterstad, Lars Axelsson

Journal:

Systematic and Applied Microbiology

Year:

2008

Language:

english

File:

PDF, 391 KB

english, 2008

23

Improved analysis of bacterial CGH data beyond the log-ratio paradigm

Lars Snipen, Otto L Nyquist, Margrete Solheim, Ågot Aakra, Ingolf F Nes

Journal:

BMC Bioinformatics

Year:

2009

Language:

english

File:

PDF, 2.44 MB

english, 2009

24

Detection of divergent genes in microbial aCGH experiments

Lars Snipen, Dirk Repsilber, Ludvig Nyquist, Andreas Ziegler, Ågot Aakra, Are Aastveit

Journal:

BMC Bioinformatics

Year:

2006

Language:

english

File:

PDF, 1.00 MB

english, 2006

25

Genomic comparisons ofBrucellaspp. and closely related bacteria using base compositional and proteome based methods

Jon Bohlin, Lars Snipen, Axel Cloeckaert, Karin Lagesen, David Ussery, Anja B Kristoffersen, Jacques Godfroid

Journal:

BMC Evolutionary Biology

Year:

2010

Language:

english

File:

PDF, 5.35 MB

english, 2010

26

Comparative genomics ofEnterococcus faecalisfrom healthy Norwegian infants

Margrete Solheim, Ågot Aakra, Lars G Snipen, Dag A Brede, Ingolf F Nes

Journal:

Year:

2009

Language:

english

File:

PDF, 935 KB

english, 2009

27

Microbial comparative pan-genomics using binomial mixture models

Lars Snipen, Trygve Almøy, David W Ussery

Journal:

Year:

2009

Language:

english

File:

PDF, 452 KB

english, 2009

28

Influence of potential growth factors on the production of proembryogenic masses of Cyclamen persicum Mill. in bioreactors

R. Lyngved, L.G. Snipen, T.-H. Iversen, A.K. Hvoslef-Eide

Journal:

Scientia Horticulturae

Year:

2008

Language:

english

File:

PDF, 679 KB

english, 2008

29

Influence of potential growth factors in predicting time to flowering in poinsettia (Euphorbia pulcherrima)

Lars G. Snipen, Roar Moe, Jan Søreng

Journal:

Scientia Horticulturae

Year:

1999

Language:

english

File:

PDF, 255 KB

english, 1999

30

Microarray-based transcriptome of Listeria monocytogenes adapted to sublethal concentrations of acetic acid, lactic acid, and hydrochloric acid

Tessema, Girum Tadesse, Møretrø, Trond, Snipen, Lars, Heir, Even, Holck, Askild, Naterstad, Kristine, Axelsson, Lars

Journal:

Canadian Journal of Microbiology

Year:

2012

File:

PDF, 960 KB

2012

31

Exploration of multivariate analysis in microbial coding sequence modeling

Tahir Mehmood, Jon Bohlin, Anja Bråthen Kristoffersen, Solve Sæbø, Jonas Warringer, Lars Snipen

Journal:

BMC Bioinformatics

Year:

2012

Language:

english

File:

PDF, 251 KB

english, 2012

32

Relative entropy differences in bacterial chromosomes, plasmids, phages and genomic islands

Jon Bohlin, Mark WJ van Passel, Lars Snipen, Anja B Kristoffersen, David Ussery, Simon P Hardy

Journal:

Year:

2012

Language:

english

File:

PDF, 4.23 MB

english, 2012

33

Analysis of evolutionary patterns of genes inCampylobacter jejuniandC. coli

Lars Snipen, Trudy M Wassenaar, Eric Altermann, Jonathan Olson, Sophia Kathariou, Karin Lagesen, Monica Takamiya, Susanne Knøchel, David W Ussery, Richard J Meinersmann

Journal:

Microbial Informatics and Experimentation

Year:

2012

Language:

english

File:

PDF, 555 KB

english, 2012

34

Improving stability and understandability of genotype-phenotype mapping inSaccharomycesusing regularized variable selection in L-PLS regression

Tahir Mehmood, Jonas Warringer, Lars Snipen, Solve Sæbø

Journal:

BMC Bioinformatics

Year:

2012

Language:

english

File:

PDF, 281 KB

english, 2012

35

A systematic search for discriminating sites in the 16S ribosomal RNA gene

Vinje, Hilde, Almøy, Trygve, Liland, Kristian, Snipen, Lars

Journal:

Microbial Informatics and Experimentation

Year:

2014

Language:

english

File:

PDF, 1.13 MB

english, 2014

36

Calendar

Dørum, Guro, Bleka, Øyvind, Gill, Peter, Haned, Hinda, Snipen, Lars, Sæbø, Solve, Egeland, Thore

Journal:

Neurobiology of Aging

Year:

1992

Language:

english

File:

PDF, 152 KB

english, 1992

37

Exact computation of the distribution of likelihood ratios with forensic applications

Dørum, Guro, Bleka, Øyvind, Gill, Peter, Haned, Hinda, Snipen, Lars, Sæbø, Solve, Egeland, Thore

Journal:

Forensic Science International: Genetics

Year:

2014

Language:

english

File:

PDF, 520 KB

english, 2014

38

On the Origins of a Vibrio Species

Tammi Vesth, Trudy M. Wassenaar, Peter F. Hallin, Lars Snipen, Karin Lagesen and David W. Ussery

Journal:

Microbial Ecology

Year:

2010

Language:

english

File:

PDF, 2.78 MB

english, 2010

39

Growth Rate-Dependent Control in Enterococcus faecalis: Effects on the Transcriptome and Proteome, and Strong Regulation of Lactate Dehydrogenase

Mehmeti, I., Faergestad, E. M., Bekker, M., Snipen, L., Nes, I. F., Holo, H.

Journal:

Applied and Environmental Microbiology

Year:

2012

Language:

english

File:

PDF, 443 KB

english, 2012

40

A Partial Least Squares Based Procedure for Upstream Sequence Classification in Prokaryotes

Mehmood, Tahir, Bohlin, Jon, Snipen, Lars

Journal:

IEEE/ACM Transactions on Computational Biology and Bioinformatics

Year:

2015

Language:

english

File:

PDF, 476 KB

english, 2015

41

Staphylococcus aureus nasal isolates from healthy individuals cause highly variable host cell responses in vitro

Askarian, Fatemeh, Sangvik, Maria, Hanssen, Anne-Merethe, Snipen, Lars, Sollid, Johanna U.E., Johannessen, Mona

Journal:

Pathogens and Disease

Year:

2014

Language:

english

File:

PDF, 237 KB

english, 2014

42

CNOGpro: detection and quantification of CNVs in prokaryotic whole-genome sequencing data

Brynildsrud, O., Snipen, L.-G., Bohlin, J.

Journal:

Year:

2015

Language:

english

File:

PDF, 856 KB

english, 2015

43

Transcriptional Response of Enterococcus faecalis V583 to Erythromycin

Aakra, A., Vebo, H., Snipen, L., Hirt, H., Aastveit, A., Kapur, V., Dunny, G., Murray, B., Nes, I. F.

Journal:

Antimicrobial Agents and Chemotherapy

Year:

2005

Language:

english

File:

PDF, 122 KB

english, 2005

44

The Abi Proteins and Their Involvement in Bacteriocin Self-Immunity

Kjos, M., Snipen, L., Salehian, Z., Nes, I. F., Diep, D. B.

Journal:

Journal of Bacteriology

Year:

2010

Language:

english

File:

PDF, 2.64 MB

english, 2010

45

A Genomic Virulence Reference Map of Enterococcus faecalis Reveals an Important Contribution of Phage03-Like Elements in Nosocomial Genetic Lineages to Pathogenicity in a Caenorhabditis elegans Infection Model

La Rosa, Sabina Leanti, Snipen, Lars-Gustav, Murray, Barbara E., Willems, Rob J. L., Gilmore, Michael S., Diep, Dzung B., Nes, Ingolf F., Brede, Dag Anders, Camilli, A.

Journal:

Infection and Immunity

Year:

2015

Language:

english

File:

PDF, 1.78 MB

english, 2015

46

An evolutionary analysis of genome expansion and pathogenicity in Escherichia coli

Bohlin, Jon, Brynildsrud, Ola B, Sekse, Camilla, Snipen, Lars

Journal:

Year:

2014

Language:

english

File:

PDF, 2.10 MB

english, 2014

47

micropan: an R-package for microbial pan-genomics

Snipen, Lars, Liland, Kristian Hovde

Journal:

BMC Bioinformatics

Year:

2015

Language:

english

File:

PDF, 624 KB

english, 2015

48

Complete Genome Sequence of the Commensal Enterococcus faecalis 62, Isolated from a Healthy Norwegian Infant

Brede, D. A., Snipen, L. G., Ussery, D. W., Nederbragt, A. J., Nes, I. F.

Journal:

Journal of Bacteriology

Year:

2011

Language:

english

File:

PDF, 40 KB

english, 2011

49

Survey of Genomic Diversity among Enterococcus faecalis Strains by Microarray-Based Comparative Genomic Hybridization

Aakra, A., Nyquist, O. L., Snipen, L., Reiersen, T. S., Nes, I. F.

Journal:

Applied and Environmental Microbiology

Year:

2007

Language:

english

File:

PDF, 481 KB

english, 2007

50

Transcriptional Responses of Enterococcus faecalis V583 to Bovine Bile and Sodium Dodecyl Sulfate

Solheim, M., Aakra, A., Vebo, H., Snipen, L., Nes, I. F.

Journal:

Applied and Environmental Microbiology

Year:

2007

Language:

english

File:

PDF, 354 KB

english, 2007